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INA-RESPOND Publication Policy

Publications are a key part of INA-RESPOND’s commitment to generating impactful and trustworthy scientific knowledge. Through a clear and standardized publication policy, INA-RESPOND ensures that all research outputs are communicated with integrity, transparency, and fair recognition of all researchers and partner institutions involved.  

Authorship follows internationally recognized standards based on ICMJE guidelines, requiring substantial contribution, involvement in drafting or revising the work, final approval of the version to be published, and accountability for all aspects of the work. 

Data generated within INA-RESPOND studies are owned by the network and its partners, and any use or publication of unpublished or confidential data is subject to prior approval. 

Researchers are welcome to utilize INA-RESPOND repository data/specimens for scientific purposes only, in accordance with applicable SOP. 

Publication List

2025

  1. A Prospective Observational Cohort Study of HIV Infection in Indonesia: Baseline Characteristics and One-Year Mortality (Published on January 20, 2025
    https://bmcinfectdis.biomedcentral.com/articles/10.1186/s12879-024-10354-8)
  2. Treatment patterns and outcomes of pulmonary tuberculosis in adult patients across seven referral hospitals in Indonesia, 2017-2020 (Published on March 1, 2025
    https://doi.org/10.5588/ijtldopen.24.0482)

2024

  1. Clinical Characteristics of Typhoid Fever and Performance of TUBEX TF IgM Test in Real-World Practice in Indonesia link: Clinical characteristics of enteric fever and performance of TUBEX TF IgM test in Indonesian hospitals – PMC (nih.gov) (Accepted on June 21, 2024.)

2023

  1. Performance of Xpert MTB/RIF and sputum microscopy compared to sputum culture for diagnosis of tuberculosis in seven hospitals in Indonesia. Anis Karuniawati, Erlina Burhan, Eko Budi Koendhori,Desvita Sari, Budi Haryanto, Titik Nuryastuti, A. A. A. Yuli Gayatri, Uleng Bahrun, R. Lia Kusumawati, Retna Indah Sugiyono, Nugroho Harry Susanto, Aly Diana, Herman Kosasih*, Adhella Menur Naysilla, Dewi Lokida, Aaron Neal, Sophia Siddiqui, Chuen-Yen Lau and Muhammad Karyana, Published 20 January 2023, Link: https://www.frontiersin.org/articles/10.3389/fmed.2022.909198/full
  2. Epidemiologic, clinical, and serum markers may improve discrimination between bacterial and viral etiologies of childhood pneumonia. Helmia Farida, Rina Triasih, Dewi Lokida, Yan Mardian, Gustiani Salim, Wahyu Nawang Wulan, Deni P. Butar-butar, Rizki Amalia Sari, Arif Budiman, Chakrawati Hayuningsih, Moh Syarofil Anam, Setya Dipayana, Mujahidah Mujahidah, Amalia Setyati, Abu Tholib Aman, Adhella Menur Naysilla, Nurhayati Lukman, Aly Diana, Muhammad Karyana, Ahnika Kline, Aaron Neal, H. Clifford Lane, Herman Kosasih and Chuen-Yen Lau, Link: https://www.frontiersin.org/articles/10.3389/fmed.2023.1140100/full
  3. The seroprevalence of anti-Histoplasma capsulatum IgG antibody among pulmonary tuberculosis patients in seven referral tuberculosis hospitals in Indonesia
    Tutik Kusmiati, Erlina Burhan, Retna Indah Sugiyono, Dona Arlinda, Adhella Menur Naysilla, Banteng Hanang Wibisono, Riat El Khair, Ni Wayan Chandrawati, Bintang Yinke Magdalena Sinaga, Irawaty Djaharrudin, Dewi Lokida, Herman Kosasih, Nugroho Harry Susanto, Deni Pepy Butar Butar, Robiatul Adawiyah, Ayu Eka Fatril, Muhammad Karyana, David W. Denning, Retno Wahyuningsih, Link: https://journals.plos.org/plosntds/article?id=10.1371/journal.pntd.0011575
  4. Development of a multiassay algorithm (MAA) to identify recent HIV infection in newly diagnosed individuals in Indonesia. Wahyu Nawang Wulan, Evy Yunihastuti, Dona Arlinda, Tuti Parwati Merati, Rudi Wisaksana, Dewi Lokida, Zehava Grossman, Kristi Huik, Chuen-Yen Lau, Nugroho Harry Susanto, Herman Kosasih, Abu Tholib Aman, Sunarto Ang, Rita Evalina, Anak Agung Ayu Yuli Gayatri, Chakrawati Hayuningsih, Agnes Rengga Indrati, July Kumalawati, Vivi Keumala Mutiawati, Mario Bernardinus Realino Nara, Asvin Nurulita, Rahmawati Rahmawati, Adria Rusli, Musofa Rusli, Dewi Yennita Sari, Justina Sembiring, Muchlis Achsan Udji Sofro, Wiwi Endang Susanti, Janice Tandraeliene, Fransisca Lianiwati Tanzil, Aaron Neal, Muhammad Karyana, Pratiwi Sudarmono, and Frank Maldarelli. Link: https://www.cell.com/iscience/fulltext/S2589-0042(23)02063-1?_returnURL=https%3A%2F%2Flinkinghub.elsevier.com%2Fretrieve%2Fpii%2FS2589004223020631%3Fshowall%3Dtrue

2022

  1. Epidemiology of community-acquired pneumonia among hospitalized children in Indonesia: a multicenter, prospective study. Lokida D, Farida H, Triasih R, et al. BMJ Open. Provisionally accepted on May 27, 2022 (Journal IF 2.692, Scopus Q1) Link: https://pubmed.ncbi.nlm.nih.gov/35728910/
  2. Hyperimmune immunoglobulin for hospitalized patients with COVID-19 (ITAC): a double-blind, placebo-controlled, phase 3, randomized trial. ITAC (INSIGHT 013) Study Group. Lancet. 2022;399(10324):530-540. doi:10.1016/S0140-6736(22)00101-5 (Journal IF 79.32, Scopus Q1, Cited by 2) Link: https://pubmed.ncbi.nlm.nih.gov/35093205/
  3. Coinfection With SARS-CoV-2 and Dengue Virus: A Case Report Highlighting Diagnostic Challenges. Hariadi P, Lokida D, Menur Naysilla A, et al. (2022) Front. Trop. Dis 3:801276. doi: 10.3389/fitd.2022.801276 (DOAJ indexed, began publishing in 2021) Link: https://www.frontiersin.org/articles/10.3389/fitd.2022.801276/full
  4. Characteristics of Drug-sensitive and Drug-resistant Tuberculosis Cases among Adults at Tuberculosis Referral Hospitals in Indonesia. Erlina Burhan, Muhammad Karyana, Anis Karuniawati, et al. Am. J. Trop. Med. Hyg., 00(00), 2022, pp. 1–8, doi:10.4269/ajtmh.22-0142, Copyright © 2022 The American Society of Tropical Medicine and Hygiene Link: https://www.ajtmh.org/view/journals/tpmd/107/5/article-p984.xml
  5. The Characteristics of Bacteremia Among Patients with Acute Febrile Illness  Requiring Hospitalization in Indonesia. Soedarmono P, Diana A, Tauran P, et al. PLOS One on Aug 9, 2022 Link: https://journals.plos.org/plosone/article?id=10.1371/journal.pone.0273414
  6. Mild Reinfection with Severe Acute Respiratory Syndrome Coronavirus 2 (SARS-CoV-2) Delta Variant: First Case Report from Indonesia. Isnaini N, Mardian Y, Lokida D, et al. Front Med (Lausanne) on Jul 22, 2022 Link: https://pubmed.ncbi.nlm.nih.gov/35935779/
  7. Performance and correlation of ten commercial immunoassays for the detection of SARS-CoV-2 antibodies. Dewi Lokida, Muhammad Karyana, Herman Kosasih, Yan Mardian, Retna Indah Sugiyono, Dona Arlinda, Nurhayati Lukman, Gustiani Salim, Deni Pepy Butar butar, Adhella Menur Naysilla, Irmansyah; Link: https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9783098/

2021

  1. Review of Current COVID-19 Diagnostics and Opportunities for Further Development. Yan Mardian, Herman Kosasih, Muhammad Karyana, Aaron Neal, Chuen-Yen Lau. Frontiers in Medicine. May 2021. Link: https://doi.org/10.3389/fmed.2021.615099
  2. Approach to Identifying Causative Pathogens of Community-Acquired Pneumonia in Children Using Culture, Molecular, and Serology Tests. Yan Mardian, Adhella Menur Naysilla, Dewi Lokida, Helmia Farida, Abu Tholib Aman, Muhammad Karyana, Nurhayati Lukman, Herman Kosasih, Ahnika Kline, Chuen-Yen Lau. Frontiers in Pediatrics. May 2021. Link: https://doi.org/10.3389/fped.2021.629318
  3. Maintaining international research collaborations in the setting of a pandemic: Approach in Indonesia. Karyana M, Kosasih H, Neal AT, Lau CY. J Glob Health. 2021;11:03087. Published 2021 Jul 17. doi:10.7189/jogh.11.03087 (Journal IF 4.413, Scopus Q1, cited by 1) Link: https://pubmed.ncbi.nlm.nih.gov/34326986/
  4. Prevalence of HIV Infection and Resistance Mutations in Patients Hospitalized for Febrile Illness in Indonesia. Merati TP, Karyana M, Tjitra E, et al. Am J Trop Med Hyg. 2021;105(4):960-965. Published 2021 Aug 30. doi:10.4269/ajtmh.20-1595 (Journal IF 2.345, Scopus Q1) Link: https://pubmed.ncbi.nlm.nih.gov/34460416/

2020

  1. “Leptospirosis in Indonesia: Diagnostic challenges associated with atypical manifestations and limited laboratory capacity”. Muhammad Hussein Gasem, Usman Hadi, Bachti Alisjahbana, Emiliana Tjitra, Muhammad Karyana, MMDEAH Hapsari, Endang Sri Lestari, Herman Kosasih, Abu Tholib Aman, Dewi Lokida, Gustiani Salim, Kanti Laras, Nurhayati Lukman, Ketut Tuti Parwati Merati, Mansyur Arif, Pratiwi Sudarmono, Vivi Lisdawati, Chuen-Yen Lau, Aaron Neal. BMC Infectious Diseases, February 2020. Link: https://www.ncbi.nlm.nih.gov/pubmed/32103771
  2.  “Underdiagnoses of Rickettsia in patients hospitalized with acute fever in Indonesia: Observational study results”. Dewi Lokida, Usman Hadi, Muhammad Karyana, Herman Kosasih, Chuen-Yen Lau, C. Jason Liang, Nurhayati Lukman, Kanti Laras, Musofa Rusli, Pratiwi Sudarmono, Rizka Humardewayantie Asdie, Dewi Murniati, I Made Susila Utama, Risna Halim Mubin, Muhammad Hussein Gasem, Bachti Alisjahbana. BMC Infectious Diseases, May 2020. Link: https://rdcu.be/b4nQa
  3. “The Identification of First COVID-19 Cluster in Indonesia“. Vivi Setiawaty,1 Herman Kosasih,2,* Yan Mardian,2 Emita Ajis,3 Endang Burni Prasetyowati,3 Siswanto,1 Muhammad Karyana,1,2 and SARS-CoV-2 Reference Laboratory, Ministry of Health, Indonesia. 2020 Dec. Link: https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7695062/
  4. Diagnosis of COVID-19 in a Dengue-Endemic Area. Dewi Lokida, Nurhayati Lukman, Gustiani Salim, Deni Pepy Butar-Butar, Herman Kosasih, Wahyu Nawang Wulan, Adhella Menur Naysilla, Yuanita Djajady, Rizki Amalia Sari, Dona Arlinda, Chuen-Yen Lau, Muhammad Karyana. American Journal of Tropical Medicine and Hygiene. September 2020. Link: https://pubmed.ncbi.nlm.nih.gov/32762798/
  5. Etiologies of severe acute respiratory infection (SARI) and misdiagnosis of influenza in Indonesia, 2013-2016. Abu Tholib Aman, Tri Wibawa, Herman Kosasih, Rizka Humardewayanti Asdie, Ida Safitri, Umi Solekhah Intansari, Yuli Mawarti, Pratiwi Sudarmono, Manyur Arif, Dwiyanti Puspitasari, Bachti Alisjahbana, Ketut Tuti Merati Parwati, Muhammad Hussein Gasem, Dewi Lokida, Nurhayati Lukman,Teguh Sarry Hartono, Yan Mardian, C Jason Liang, Sophia Siddiqui, Muhammad Karyana, Chuen-Yen Lau. Influenza and Other Respiratory Viruses. July 2020. Link: https://pubmed.ncbi.nlm.nih.gov/32666619/
  6. Chikungunya in Indonesia: Epidemiology and diagnostic challenges. Mansyur Arif, Patricia Tauran, Herman Kosasih, Ninny Meutia Pelupessy, Nurhayana Sennang, Risna Halim Mubin, Pratiwi Sudarmono, Emiliana Tjitra, Dewi Murniati, Anggraini Alam, Muhammad Hussein Gasem, Abu Tholib Aman, Dewi Lokida, Usman Hadi, Ketut Tuti Merati Parwati, Chuen-Yen Lau, Aaron Neal, Muhammad Karyana. PLOS NTDs. June 2020. Link: https://pubmed.ncbi.nlm.nih.gov/32479497/
  7. Comparison of Commercial Enzyme-Linked Immunosorbent Assay and Immunofluorescence Assay for Diagnosis of Acute Rickettsia typhi Infections. Lokida D, Sudarmono P, Kosasih H, Butar-Butar DP, Salim G, Antonjaya U, Sari RA, Aman AT, Parwati I, Arif M, Chuen-Yen Lau, Karyana M. https://www.ncbi.nlm.nih.gov/pubmed/31448989 Link: https://www.liebertpub.com/doi/full/10.1089/vbz.2019.2451

2019

  1. An observational prospective cohort study of the epidemiology of hospitalized patients with acute febrile illness in Indonesia. Gasem MH, Kosasih H, Tjitra E, Alisjahbana B, Karyana M, Lokida D, Neal A, C Jason Liang, Aman AT, Arif M, Sudarmono P, Suharto, Merati TP, Lisdawati V, Siswanto, Siddiqui S, Lane HC https://www.ncbi.nlm.nih.gov/pubmed/31923174
  2. Dengue viral infection in Indonesia: Epidemiology, diagnostic challenges, and mutations from an observational cohort study. I Made Susila Utama, Nurhayati Lukman, Dewi Dian Sukmawati, Alisjahbana B, Anggraini Alam, Dewi Murniati, I Made Gede Dwi Lingga Utama, Dwiyanti Puspitasari, Kosasih H, Ida Laksono, Karyana M, Mulya Rahma Karyanti, M.M.D.E.A.H. Hapsari, Ninny Meutia, C Jason Liang, Wahyu Nawang Wulan, Chuen-Yen Lau, Ketut Tuti Merati Parwati https://doi.org/10.1371/journal.pntd.0007785
  3. A Review of Hantavirus Research in Indonesia: Prevalence in Humans and Rodents, and the Discovery of Serang Virus. Nurhayati Lukman, Kosasih H, Ima Nurisa Ibrahim, Antonius Arditya Pradana, Neal A, Karyana M. https://www.mdpi.com/1999-4915/11/8/698

2018

  1. Building capacity for advances in tuberculosis research; proceedings of the third RePORT international meetingMultiple Viral Infection Detected from Influenza-Like Illness Cases in Indonesia. Yuri F. van der Heijden, Fareed Abdullah, Bruno B. Andrade, Jason R. Andrews, Devasahayam J. Christopher, Julio Croda, Heather Ewing, David W. Haas, Mark Hatherill, C. Robert Horsburgh Jr., Vidya Mave, Helder I. Nakaya, Valeria Rolla, Sudha Srinivasan, Retna Indah Sugiyono, Cesar Ugarte-Gil, Carol Hamilton, Elsevier Ltd, 2018, 1472-9792. Link: https://ina-respond.net/wp-content/uploads/2018/11/Tuberculosis_RePORT-Intnl-Meeting-Final.pdf
  2. Case Report: Two Confirmed Cases of Human Seoul Virus Infections in Indonesia. Khie Chen Lie, Mochamad Helmi Aziz, Herman Kosasih, Aaron Neal, Caleb Leonardo Halim, Wahyu Nawang Wulan, Muhammad Karyana and Usman Hadi. BMC Infectious Diseases Journal, 16 November 2018. Link: https://www.ncbi.nlm.nih.gov/pubmed/30445913.

2017

  1. Multiple Viral Infection Detected from Influenza-Like Illness Cases in Indonesia. Adam, K., K.N. Pangesti, and V. Setiawaty, Biomed Res Int, 2017. 2017: p. 9541619. Link: https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5292373/pdf/BMRI2017-9541619.pdf
  2. Sepsis Study Publication: “Causes and Outcomes of Sepsis in Southeast Asia: A Multinational Multicenter Cross-sectional Study”; The Lancet Global Health, February 2017. Link: http://thelancet.com/journals/langlo/article/PIIS2214-109X(17)30007-4/fulltext

2016

  1. Commentary: data sharing in South East Asia. Grue L, Siddiqui S, Limmathurotsakul D, Kamaludi A, Karyana M, Lau CY. BMJ, 2016 Oct 10;355:i5363. Link: http://www.bmj.com/content/bmj/355/bmj.i5363.full.pdf
  2. Case report: Weil’s disease with multiple organ failure in a child living in dengue endemic area. Lokida, D., A. Budiman, U. E. Pawitro, M. H. Gasem, M. Karyana, H. Kosasih and S. Siddiqui. BMC Res Notes, 2016. 9(1): p. 407. Link: https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4986206/pdf/13104_2016_Article_2210.pdf
  3. Comparison of the Hemagglutination Inhibition Test and IgG ELISA in Categorizing Primary and Secondary Dengue Infections Based on the Plaque Reduction Neutralization Test. Lukman, N., G. Salim, H. Kosasih, N. H. Susanto, I. Parwati, S. Fitri, B. Alisjahbana, S. Widjaja and M. Williams. Biomed Res Int, 2016. 2016: p. 5253842. Link: https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4944055/pdf/BMRI2016-5253842.pdf
  4. The Epidemiology, Virology and Clinical Findings of Dengue Infections in a Cohort of Indonesian Adults in Western Java. Kosasih H, Alisjahbana B, Nurhayati, de Mast Q, Rudiman IF, Widjaja S, Antonjaya U, Novriani H, Susanto NH, Jusuf H, van der Ven A, Beckett CG, Blair PJ, Burgess TH, Williams M, Porter KR. PLoS Negl Trop Dis. 2016 Feb 12;10(2):e0004390. Link: http://www.plosntds.org/article/fetchObject.action?uri=info:doi/10.1371/journal.pntd.0004390&representation=PDF
  5. Detection of group A rotavirus strains circulating among children with acute diarrhea in Indonesia. Nirwati H, Wibawa T, Aman AT, Wahab A, Soenarto Y. Springerplus. 2016 Jan 29;5:97. Link: https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4731376/
  6. Study of viremic profile in febrile specimens of chikungunya in Bandung, Indonesia. Riswari SF, Ma’roef CN, Djauhari H, Kosasih H, Perkasa A, Yudhaputri FA, Artika IM, Williams M, van der Ven A, Myint KS, Alisjahbana B, Ledermann JP, Powers AM, Jaya UA. J Clin Virol. 2016 Jan;74:61-5. Link: http://www.sciencedirect.com/science/article/pii/S1386653215007519

2015

  1. Association of opportunistic infections with HIV-RNA and CD4 cell count in pre-arv and arv failure at the care support treatment clinic of Sanglah Hospital, Bali.Utama, M. S., & Merati, T. P. Association of opportunistic infections with HIV-RNA and CD4 cell count in pre-arv and arv failure at the care support treatment clinic of Sanglah Hospital, Bali. Journal of Epidemiological Research, 2015:2(2), p13. Link: http://www.sciedupress.com/journal/index.php/jer/article/view/7909/5112
  2. RePORT International: Advancing Tuberculosis Biomarker Research Through Global Collaboration. Hamilton CD, Swaminathan S, Christopher DJ, Ellner J, Gupta A, Sterling TR, Rolla V, Srinivasan S, Karyana M, Siddiqui S, Stoszek SK, Kim P. Clin Infect Dis. 2015 Oct 15;61Suppl 3:S155-9. Link: http://cid.oxfordjournals.org/content/61/suppl_3/S155.full.pdf+html
  3. Molecular epidemiology study of Mycobacterium tuberculosis and its susceptibility to anti-tuberculosis drugs in Indonesia. Lisdawati V, Puspandari N, Rif’ati L, Soekarno T, M M, K S, Ratnasari L, Izzatun N, Parwati I. BMC Infect Dis. 2015 Aug 22;15:366. Link: http://www.biomedcentral.com/content/pdf/s12879-015-1101-y.pdf
  4. INA-RESPOND: a multi-centre clinical research network in Indonesia. Karyana M, Kosasih H, Samaan G, Tjitra E, Aman AT, Alisjahbana B, Fatmawati, Gasem MH, Arif M, Sudarmono P, Suharto, Merati TP, Lane C, Siswanto, Siddiqui S. Health Res Policy Syst. 2015 Jul 29;13:34. Link: http://www.health-policy-systems.com/content/pdf/s12961-015-0024-9.pdf
  5. Cyclosporine A decreases the fluconazole minimum inhibitory concentration of Candida albicans clinical isolates but not biofilm formation and cell growth. Wibawa T, Nurrokhman, Baly I, Daeli PR, Kartasasmita G, Wijayanti N. Trop Biomed. 2015 Mar;32(1):176-82. Link: http://www.msptm.org/files/176_-_182_Wibawa_T.pdf
  6. Chikungunya Virus Mutation, Indonesia, 2011. Maha MS, Susilarini NK, Hariastuti NI; Subangkit. Emerg Infect Dis. 2015 Feb;21(2):379-81. Link: http://wwwnc.cdc.gov/eid/article/21/2/pdfs/14-1121.pdf
  7. Preliminary Study of Herbal Topical Repellent Made of Betel Leaves (Piper betle) and Patchouli Oil (Pogostemon cablin) Mixture Against Yellow Fever Mosquito (Aedes aegypti).Widawati, M., & Riandi, M. U. BIOTROPIA-The Southeast Asian Journal of Tropical Biology, 2015;22(1). Link: http://journal.biotrop.org/index.php/biotropia/article/view/378/254

2014

  1. Efficacy of Artemisinin-Naphtoquine and Dihydroartemisinin-Piperaquine for uncomplicated malaria patient at primary health care. Siswantoro, H., Hasugian, A. R., & Tjitra, E. Health Science Journal of Indonesia, 2014 Dec 2;5:100-105. Link: http://ejournal.litbang.depkes.go.id/index.php/HSJI/article/view/3598/3550
  2. Antibody response against three Plasmodium falciparum merozoite antigens in Mamuju District, West Sulawesi Province, Indonesia. Sennang N, Rogerson S, Wahyuni S, Yusuf I, Syafruddin D. Malaria Journal. 2014 Sep 25;13:381. Link: http://www.malariajournal.com/content/pdf/1475-2875-13-381.pdf
  3. Managing Seasonal Influenza: oseltamivir Treatment Policy in Indonesia? Kosasih H, Bratasena A, Pangesti K, Laras K, Samaan G. Acta Med Indones. 2014 Jan;46(1):58-65. Link: http://www.inaactamedica.org/archives/2014/24760811.pdf

Book

  1. Panduan Penulisan Naskah Ilmiah. Diana, Aly and Pradana, Antonius and Kamaludi, Armaji and Hidayat, Dedy and Arlinda, Dona and Indah, Retna Mustika and Susanto, Nugroho Harry and Kosasih, Herman and Karyana, M and Dodd, Lori E and Nason, Martha and Polis, Michael A and Touchette, Nancy and Salim, Agus and Iskandar, Shelly (2017) Lembaga Penerbit Balitbangkes, Jakarta. ISBN 978-602-373-113-8 – download here
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